v1.1.3 pre-release

Author: agalitsyna

CHANGES.md

@@ -1,3 +1,19 @@
+### 1.1.3 (2025-01-31) ###
+
+Bugfixes of parse2:
+- Standartiation of complex pair types: names R1&2 and R1-2 are now uniform in the code.
+This was inconistent before leading to the bugs at the positions assignment for R1&2.
+
+- Walk policies are applied not only to complex walks but also to non-chimeric reads in parse2.
+
+
+Bugfizes of pairtools select: 
+- Empty columns at the end of the .pairs file are not truncated anymore.
+
+New tests: 
+- parse2 tests for R1&2 and R2 reads (read25/27). 
+- parse2 tests for correct flipping (read25/26).
+
 ### 1.1.2 (2024-12-11) ###
 
 Bugfixes:

pairtools/__init__.py

@@ -10,6 +10,6 @@
 
 """
 
-__version__ = "1.1.2"
+__version__ = "1.1.3"
 
 # from . import lib