Extract pairs based on overlaps

[jeff-godwin]

Hi team,

I'm working with a list of regions and would like to check how these regions interact using a MicroC dataset.
I have generated a BEDPE (chr1 start1 end1 chr2 start2 end2) using all possible combinations of the regions of interest.

I would like to extract pairs that overlaps with these BEDPE interactions. I have tried extracting the pairs using
python interval tree through the pairtools select --startup-code. Do you have any other pointers for extracting such
pairs through overlaps.

Many thanks,
Jeff