The Carpentries Incubator

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222 repositories

hpc-intro
Public
An Introduction to High Performance Computing
english lesson alpha carpentry-lesson carpentries-incubator hpc-carpentry helpwanted-list
R
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Other
•150•149•70•3•Updated Dec 11, 2025Dec 11, 2025
HPC_Advanced_User-Teaching-performance-programming-to-scientists
Public
HPC-User Software Carpentry module
hpc english lesson pre-alpha carpentries-incubator
Other
•1•1•0•1•Updated Dec 11, 2025Dec 11, 2025
carpentries-incubator.org
Public
HTML
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Other
•7•6•1•0•Updated Dec 11, 2025Dec 11, 2025
better-research-software
Public
Building Better Research Software
beta english lesson fair research-software fair-software carpentries-incubator
Python
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Other
•19•18•23•0•Updated Dec 10, 2025Dec 10, 2025
better-research-software-r
Public
Building Better Research Software R
beta english lesson r-language r-programming r-lang carpentries-incubator environment-management r-programming-language code-readability
R
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Other
•3•3•22•4•Updated Dec 9, 2025Dec 9, 2025
python-intermediate-development
Public
"Intermediate Research Software Development Skills (Python)" Lesson Material
python training beta software-development lesson training-materials carpentry-lesson intermediate software-design software-engineering-research
TeX
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Other
•76•61•66•6•Updated Dec 9, 2025Dec 9, 2025
meetings-rse
Public
How to Run a Meeting
english lesson meetings pre-alpha professional-skills carpentries-incubator meetings-enhancement
Other
•1•2•7•0•Updated Dec 9, 2025Dec 9, 2025
statistical-inference-for-biology
Public
Statistical Inference for Biology
r statistics biology english lesson alpha carpentries-incubator
R
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Other
•6•3•5•0•Updated Dec 9, 2025Dec 9, 2025
targets-workshop
Public
Pre-alpha {targets} workshop
r reproducible-research english lesson pre-alpha
R
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Other
•12•36•23•6•Updated Dec 9, 2025Dec 9, 2025
byte-sized-rse-vscode
Public
Byte-Sized RSE: Code Development & Debugging with IDEs
debugging ide vscode english lesson alpha carpentries-incubator byte-sized-rse
Dockerfile
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Other
•0•0•0•0•Updated Dec 9, 2025Dec 9, 2025
statistical-experimental-design
Public
Statistical Experimental Design
statistics english lesson pre-alpha experimental-design carpentries-incubator
R
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Other
•2•2•0•0•Updated Dec 9, 2025Dec 9, 2025
medical-image-processing
Public
Medical Image Processing with Python
python image-processing english lesson radiology pre-alpha pathology carpentries-incubator
Other
•1•5•12•3•Updated Dec 9, 2025Dec 9, 2025
julia-novice
Public
A lesson exploring the Julia language
programming julia julia-language lesson alpha carpentries-incubator
Julia
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Other
•24•17•13•0•Updated Dec 9, 2025Dec 9, 2025
lesson-parallel-python
Public
Parallel Programming in Python
python beta english lesson dask parallel-programming carpentries-incubator
Dockerfile
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Other
•15•11•51•1•Updated Dec 9, 2025Dec 9, 2025
SDC-BIDS-EEG-EEGLAB
Public
Working with EEGLAB and BIDS-EEG
programming matlab eeg english eeg-signals neuroimaging lesson eeg-data bids pre-alpha
Other
•3•6•1•1•Updated Dec 9, 2025Dec 9, 2025
Natural-language-processing
Public
Fundamentals of natural language processing with Python
python nlp natural-language-processing english lesson pre-alpha carpentries-incubator
Jupyter Notebook
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Other
•2•6•1•1•Updated Dec 9, 2025Dec 9, 2025
blogging-with-hugo-and-github-pages
Public
Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages
blog github-pages hugo beta hugo-site english lesson
Other
•1•3•0•0•Updated Dec 9, 2025Dec 9, 2025
machine-learning-neural-python
Public
Introduction to artificial neural nets with Python
python machine-learning deep-learning machine beta ml english classification image-classification lesson
Other
•10•7•7•0•Updated Dec 9, 2025Dec 9, 2025
good-practices-lesson
Public
Good practices in research software development (without Git)
english lesson pre-alpha research-software-engineering carpentries-incubator
Other
•1•2•24•1•Updated Dec 9, 2025Dec 9, 2025
green-software-hpc
Public
Green Software Use on HPC
sustainability hpc english lesson alpha green-computing carpentries-incubator hpc-carpentry
Python
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Other
•3•5•0•1•Updated Dec 9, 2025Dec 9, 2025
docker-introduction
Public
Reproducible Computational Environments using Containers
docker education containers beta english lesson hacktoberfest carpentries carpentries-incubator helpwanted-list
Python
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Other
•53•52•37•6•Updated Dec 9, 2025Dec 9, 2025
swc-ext-python
Public
Workflows with Python and Git
python english lesson alpha carpentries-incubator helpwanted-list
Python
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Other
•5•2•7•0•Updated Dec 9, 2025Dec 9, 2025
spatial-transcriptomics
Public
Spatial Transcriptomics
beta english lesson 10x-genomics spatial-transcriptomics carpentries-incubator
JavaScript
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Other
•3•0•27•0•Updated Dec 9, 2025Dec 9, 2025
fair-for-leaders
Public
FAIR for leaders
english lesson fair pre-alpha life-sciences carpentries-incubator
Python
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Other
•0•0•0•1•Updated Dec 9, 2025Dec 9, 2025
hermes_metadata_lesson
Public
Data and Metadata in the Humanities: Structures, Schemas, and Standards
metadata english lesson digital-humanities pre-alpha humanities carpentries-incubator
Other
•0•0•0•0•Updated Dec 9, 2025Dec 9, 2025
hpc-workflows-jube
Public
An introductory lesson on using JUBE for HPC workloads.
benchmarking automation hpc english lesson reproducibility workflows pre-alpha carpentries-incubator
TeX
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Other
•0•2•0•0•Updated Dec 9, 2025Dec 9, 2025
fair-for-busy-biologists
Public
A short course on FAIR and data managment for biomedical research
english lesson alpha fair data-management biomedical biomedical-data-science carpentries-incubator
Other
•0•1•0•1•Updated Dec 9, 2025Dec 9, 2025
byte-sized-rse-code-quality
Public
Byte-Sized RSE: Code Style, Quality & Linting
english code-style code-quality lesson alpha carpentries-incubator code-linting byte-sized-rse
Dockerfile
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Other
•0•0•0•0•Updated Dec 9, 2025Dec 9, 2025
SDC-BIDS-dMRI
Public
Introduction to dMRI
python programming neuroimaging lesson bids dwi fsl pre-alpha diffusion-mri tractography
Jupyter Notebook
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Other
•18•26•23•2•Updated Dec 9, 2025Dec 9, 2025
reproducible-publications-quarto
Public
Introduction to Reproducible Publications with Quarto
r rstudio open-science english project-management lesson alpha quarto reproducible-paper qmd
Other
•27•17•7•0•Updated Dec 9, 2025Dec 9, 2025