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@hannahbaumann hannahbaumann changed the title Fix multi chain RMSD analysis [WIP] Fix multi chain RMSD analysis Dec 18, 2025
@hannahbaumann hannahbaumann self-assigned this Dec 19, 2025
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Check if this works for triclinic boxes. From Irfan: There might also be code in MDAnalysis that does the math also working for triclinic boxes.

@hannahbaumann hannahbaumann marked this pull request as ready for review January 16, 2026 10:30

@pytest.fixture(scope="session")
def simulation_nc_multichain() -> pathlib.Path:
return "data/simulation.nc"
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Will put this on permanent storage / swap with the skipped dataset.

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Analysis does not work properly for proteins with multiple chains

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