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@opencobra

openCOBRA

Community driven constraint-based reconstruction, analysis and modelling of biology

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  1. cobrapy cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 533 234

  2. cobratoolbox cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    MATLAB 274 333

  3. COBRA.jl COBRA.jl Public

    High-level, high-performance, constraint-based reconstruction and analysis in Julia

    Julia 63 32

  4. MASS-Toolbox MASS-Toolbox Public

    Mass Action Stoichiometric Simulation (MASS) Toolbox

    Mathematica 12 8

  5. MATLAB.devTools MATLAB.devTools Public

    MATLAB Development Tools

    MATLAB 28 35

  6. memote memote Public

    memote – the genome-scale metabolic model test suite

    HTML 143 32

Repositories

Showing 10 of 36 repositories
  • reconstructor Public

    Open source tool for biochemical network reconstruction

    opencobra/reconstructor’s past year of commit activity
    Java 1 GPL-3.0 2 0 0 Updated Dec 12, 2025
  • swiglpk Public

    Simple swig bindings for the GNU Linear Programming Kit

    opencobra/swiglpk’s past year of commit activity
    Python 29 GPL-3.0 10 2 2 Updated Dec 11, 2025
  • cobratoolbox Public

    The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

    opencobra/cobratoolbox’s past year of commit activity
    MATLAB 274 333 58 (1 issue needs help) 5 Updated Dec 10, 2025
  • Medusa Public

    Analysis of ensembles of metabolic network reconstructions

    opencobra/Medusa’s past year of commit activity
    Python 21 MIT 9 28 23 Updated Dec 5, 2025
  • COBRA.tutorials Public

    Repository of tutorials for The COBRA Toolbox

    opencobra/COBRA.tutorials’s past year of commit activity
    MATLAB 23 59 3 0 Updated Dec 5, 2025
  • cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    opencobra/cobrapy’s past year of commit activity
    Python 533 GPL-2.0 234 80 (4 issues need help) 18 Updated Dec 4, 2025
  • sphinx_cobra_theme Public Forked from martamatos/sphinx_cobra_theme
    opencobra/sphinx_cobra_theme’s past year of commit activity
    HTML 0 MIT 4 0 0 Updated Dec 1, 2025
  • COBRA.papers Public

    Repository for scripts related to reproducing the results of an individual publication

    opencobra/COBRA.papers’s past year of commit activity
    MATLAB 10 16 1 0 Updated Nov 14, 2025
  • escher Public
    opencobra/escher’s past year of commit activity
    JavaScript 0 0 2 0 Updated Oct 27, 2025
  • memote Public

    memote – the genome-scale metabolic model test suite

    opencobra/memote’s past year of commit activity
    HTML 143 Apache-2.0 32 133 2 Updated Aug 14, 2025
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