Hello Automation

This is a simple example of event-driven bioinformatics workflows using Temporal, Nextflow and Seqera Platform.

Requirements

• Temporal
• uv
• seqerakit
• Seqera Platform CLI

Usage

Deploy the Seqera Platform resources

Create a token for the Seqera Platform programmatic access and set it in the TOWER_ACCESS_TOKEN environment variable.

Customize then deploy the resources in the platform directory:

seqerakit platform/*.yml

The necessary environment variables will be set in the platform/.envrc file.

Run the temporal automation

Copy the .env.TEMPLATE file to .env and fill in the values for the environment variables.

In separate terminal windows, run the following commands:

make run-temporal
make run-worker
make run-workflow
make trigger-workflow

These commands will start the Temporal server, the worker and the workflow.