Migrate test_locate_region from integration tests to anoph test suite#893
Open
GitGautamHub wants to merge 4 commits intomalariagen:masterfrom
Open
Migrate test_locate_region from integration tests to anoph test suite#893GitGautamHub wants to merge 4 commits intomalariagen:masterfrom
GitGautamHub wants to merge 4 commits intomalariagen:masterfrom
Conversation
Co-authored-by: Cursor <cursoragent@cursor.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Migrated
test_locate_regiontest fromtests/integration/test_amin1.pytotests/anoph/test_base.py.Changes:
test_locate_region()function totests/anoph/test_base.pyusing simulated data fixturesamin1_sim_api_snpfixture for SNP data capabilitiesgenome_features()instead of deprecatedgeneset()methodBenefits:
Test passes:
pytest tests/anoph/test_base.py::test_locate_region