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Pull requests: malariagen/malariagen-data-python

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Pull requests list

docs: reference CONTRIBUTING guide and streamline developer setup
#899 opened Feb 21, 2026 by adilraza99 Loading…
Fix lstrip column corruption in plot_frequencies_heatmap()
#898 opened Feb 21, 2026 by 31puneet Loading…
1
Fix incorrect cache key in ihs_gwss to prevent cache collisions
#896 opened Feb 21, 2026 by blankirigaya Loading…
1
1
fix: dedent empty-data check in cnv_discordant_read_calls (#777)
#895 opened Feb 21, 2026 by AswaniSahoo Loading…
6 tasks done
1
1
Migrate test_locate_region for ag3, af1, and adir1 to anoph test suite
#894 opened Feb 21, 2026 by GitGautamHub Loading…
Migrate test_locate_region from integration tests to anoph test suite
#893 opened Feb 21, 2026 by GitGautamHub Loading…
docs: fix spelling typo in index.rst
#892 opened Feb 21, 2026 by GitGautamHub Loading…
1
Fix deprecated Plotly API calls in anoph (Mapbox and Trace methods)
#889 opened Feb 21, 2026 by NgangaKamau3 Loading…
1
fix(tests): handle missing sex_call in diplotype clustering tests for Amin1/Adir1
#888 opened Feb 20, 2026 by adilraza99 Loading…
1
3
docs: add macOS developer setup guide
#885 opened Feb 20, 2026 by PaulaYaniz Loading…
1
4
Fix plot_frequencies_time_series reading wrong cohort after filtering
#879 opened Feb 20, 2026 by blankirigaya Loading…
1
4
Fix broken DOI link and docstring typos
#874 opened Feb 20, 2026 by Vedag812 Loading…
1
Fix TypeError for single-exon transcripts in veff.Annotator.get_children
#873 opened Feb 20, 2026 by Vedag812 Loading…
1
Add AI-use policy
#872 opened Feb 20, 2026 by jonbrenas Loading…
Update contact details in pyproject.toml
#871 opened Feb 20, 2026 by jonbrenas Loading…
Fix g123 test failures on Adir1/Amin1 by falling back to segregating sites when no phasing analysis is available
#870 opened Feb 20, 2026 by blankirigaya Loading…
1
13
Improve plot_njt errors for insufficient data
#869 opened Feb 20, 2026 by Aryan-SINGH-GIT Loading…
1
2
Fix pandas chained indexing to restore NumPy 2.x compatibility
#854 opened Feb 2, 2026 by adilraza99 • Draft
1
Fix CI ValueError on NumPy 2.x by avoiding VLENUTF8 string dtype in tests
#853 opened Feb 1, 2026 by adilraza99 • Draft
1
6
Fix ValueErrors
#850 opened Jan 23, 2026 by leehart • Draft
Amend numpy-version for test matrix triage
#849 opened Jan 23, 2026 by leehart • Draft
@ahernank @jonbrenas
1
Update Bokeh triage
#846 opened Jan 16, 2026 by leehart • Draft
@ahernank @jonbrenas
7
Avoid segmentation fault errors during CI tests triage
#842 opened Jan 13, 2026 by leehart • Draft
@ahernank @jonbrenas
13
Fix phenotype data path construction and remove hardcoded release version
#818 opened Sep 7, 2025 by Aditya365x Loading…
add advanced haplotype clustering
#817 opened Sep 5, 2025 by sanjaynagi Loading…
2 tasks done
17
ProTip! Exclude everything labeled bug with -label:bug.